In this research, an in vivo test system is assembled in order to perform a study on group II intron splicing. Group II intron splicing is studied because it tends to interrupt reading frames in plastid and bacteria. The gene, udiA, is a chimeric reporter gene which is transcribed in tobacco plants. This gene is formed by fusing the tobacco plastid DNA region (which contains the atpF gene intron) with the region of the plastid that codes for the udiA chimeric reporter gene. The atpF intron is specifically chosen for this study because it is the smallest of the introns found in tobacco plastid DNA. Furthermore, a northern blot analysis is performed to confirm that the correct intron is removed. Upon viewing the results, it was discovered that the atpF gene region contained adequate amounts of nucleotides for both upstream and downstream exons to correctly splice a group II intron. Through this research, it was concluded that the plasmid transformants were not affected by atpF splicing. This indicated that the atpF intron excision is not the reason for the ineffective splicing ability of group II intron by the chimeric reporter gene udiA in tobacco plastids.
Reference:
Bock, Ralph, and Pal Maliga. 1995. Correct Splicing of a Group II Intron from a Chimeric Reporter Gene Transcript in Tobacco Plastids. Nucleic Acids Research 23.13: 2544-2547.
Edited: 12/14/2011